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Monday, 28 July 2014

Senior Research Fellow @ JIPMER, Puducherry

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Position details

Applications are invited for the following posts under the ICMR-DHR funded project entitled “Population pharmacokinetics of Anthracylines based regimens in breast cancer patients” for a period of six months (extendable for another six months).
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  • Interested and eligible candidates should send their details on a plain paper along with copies of certificate(s) on or before 7th AUGUST 2014 and directly appear for the interview along with necessary original certificates at the Department of Pharmacology, JIPMER, Puducherry on 9thAUGUST 2014 at 9.00 AM. No individual call letters will be sent and no TA/DA will be given for attending the interview.

Read more

http://jipmer.edu.in/wp-content/uploads/2014/07/Website-JIPMER-ICMR.pdf

Sunday, 27 July 2014

CCBuilder: a tool for building, designing and assessing coiled-coil-protein assemblies

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Abstract

The ability to accurately model protein structures at the atomistic level underpins efforts to understand protein folding, to engineer natural proteins predictably, and to design proteins de novo. Homology based methods are well established and produce impressive results. However, these are limited to structures presented by and resolved for natural proteins. Addressing this problem more widely and deriving truly ab initio models requires: mathematical descriptions for protein folds; the means to decorate these with natural, engineered or de novo sequences; and methods to score the resulting models.

CCBuilder Tutorial:

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Availability:

Read more

http://bioinformatics.oxfordjournals.org
http://coiledcoils.chm.bris.ac.uk/app/cc_builder/

Thursday, 24 July 2014

PhD Scholarship – Bioinformatics @ The University of Queensland Diamantina Institute

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Position details

  • The Project:

Squamous cell carcinoma (SCC) is the second most common form of skin cancer. In Australia there were 138,000 new diagnoses of SSC, and 445 reported fatalities from the disease in 2010.
The successful Scholar will pursue a PhD degree in bioinformatics using next generation sequencing data to study the genetic landscape in Squamous Cell Carcinoma (SCC) and the relationship between UV damaged skin, a pre-cancerous condition called Actinic keratosis (AK), and SCC. The candidate will develop algorithms to perform quality control of sequence data and methods to capture a comprehensive set of mutations in these samples. Methods to control for false positives and coincidental findings will be developed using a resource of 2000 control exomes that have been sequenced at The University of Queensland Centre for Clinical Genomics (UQCCG).
The candidate will then develop statistical methods to search for biomarkers that can be used to identify the transition between tumour states and study the heterogeneity between tumours using SNPs, structural variations and copy number information. The project will be performed in collaboration with the Genomic Medicine and Cancer programs at UQDI. This analysis will require the use of high performance computing and programming in R and Perl.

The Person

  • The candidate will have a 1st Class Honours degree or equivalent in science. We will consider students from a wide range of backgrounds, including: mathematics, statistics, epidemiology, computer science, bioinformatics, physics, genetics, and molecular biology. Laboratory experience in molecular biology, cell biology and/or genetics is also desirable, although not necessary.
  • International applicants must meet the University's English language proficiency requirements.

Remuneration

  • The base stipend will be at the rate of AUD$25,392.00 per annum (2014 rate) tax-free for three years with the possibility of a six month extension in approved circumstances. Top-up salary may be available to suitably qualified candidates.

Enquiries

For further information about the research project, please contact Professor David Evans (d.evans1@uq.edu.au) or Dr Paul Leo (p.leo@uq.edu.au). Enquiries can be received at any time. Start dates are throughout the year with the University allowing registrations commencing Jan 1, April 1, July 1 or Oct 1 each year.
For information about applying for a scholarship and for the full terms and conditions, please visit the UQ Graduate School website at http://www.uq.edu.au/grad-school/scholarships-and-fees.
To submit an application for this role, use the Apply button below. All applicants must supply the following documents: Cover letter, CV/Resume and Academic Records (indicating GPA scores/grades).

Applications close:

  • 03 Aug 2014 (11:55 PM) E. Australia Standard Time

Read more

Click here to Apply

Wednesday, 23 July 2014

Application for Ph.D. Programme-2014 @ NATIONAL INSTITUTE OF VIROLOGY

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Programme details:

The National Institute of Virology invites applications for Ph.D. programme from candidates who are Bonafide Indian citizens and having consistently good academic record. Candidates should have strong motivation to pursue research in modern biology leading to a Ph.D. degree. The list of available projects for the current session will be provided to the candidates at the time of interview. Students with only post graduate degree and having valid fellowship from CSIR/DBT/ICMR/UGC/DST-Inspire/BINC are eligible to apply. All eligible students interested in joining NIV must submit applications available at http://www.niv.co.in / www.icmr.nic.in on or before 31st July, 2014.

Eligibility

  1. The candidate should have Postgraduate degree in any branch of Life Sciences(Masters Degree in Life Sciences/ Biological Sciences/ Biotechnology/ Microbiology/ Bioinformatics) having at least 50% or equivalent Grade Point Average (GPA).
  2. Students belonging to reserve category will be eligible for 5% relaxation for students of Maharashtra state only.
  3. The candidate should hold a valid Junior Research Fellowship from CSIR/UGC/ICMR/DBT-INSPIRE/BINC and Fellowship on the date of joining.
  4. Candidates who have qualified for GATE or only Lectureship in CSIR-UGC (NET) are not eligible to apply.
  5. NIV does not take any responsibility to provide financial assistance.
  6. Other terms and conditions of the fellowship will be as directed by the agency awarding the fellowship.
  7. The upper age limit for JRF shall be 28 years which is relaxed up to 5 years in the case of candidates belonging to SC/ST/Women/PH and 3 years in case of OBC candidates.
  8. Those who have already availed fellowship in other organizations and seeking transfer should clearly indicate so, on their application.
  9. Reservation will be as per prescribed guidelines. There will be no relaxation for unreserved positions as per Govt.of IndiaOrder No.36011/1/98.Estt.(Res.) dt.01/7/1998.

APPLICATIONS:

Candidates who satisfy the above criterion may submit their applications in the prescribed format to the Director, National Institute of Virology, 20-A, Dr Ambedkar Road, Pune - 411 001 before 31/7/2014. Please superscribe “Application for Ph.D. programme” on the left side of the envelope. Do not attach any certificates (Original or Photocopy) along with the application form. However, all the original documents must be produced at the time of interview, failing which they will not be interviewed. SC/ST/OBC candidates should attach attested true copy of Caste Certificate/Latest non-creamy layer certificate along with the application and originals should be produced at the time of interview.

PERSONAL INTERVIEWS

  • Personal interview will be held at NIV, Pune.
  • The list of shortlisted candidates will be displayed on NIV / ICMR website.
  • Candidates should make their own arrangements for stay at Pune.
  • No TA / DA will be provided for attending the personal interviews as the selected candidates will need to stay for two or three days more for finalization of guide.
  • Mere fulfilling of the minimum requirements stipulated in the advertisement would not automatically entitle a candidate for selection.
  • The decision of the Institute shall be final and binding in this regard. Canvassing in any form and/or bringing in
    any influence, political or otherwise will be treated as a disqualification.
  • Candidates should bring all the original and attested copies of following documents for attending the interview.
  1. Birth certificate/ proof of Date of birth
  2. If the candidates belongs to Reserved Category / Physical handicapped propercertificate issued by competent authorities
  3. Statement of marks of each year/semester of graduation and post graduation.
  4. Fellowship Certificate
  5. For OBC category, valid Non-creamy layer certificate
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  • For further details or enquiry please write to mcc_pashan@yahoo.co.in. Download the application format from http://www.niv.co.in / www.icmr.nic.in/ Websites

Read more

Ph.D. Programme-2014

The Jackson Laboratory for Genomic Medicine Grand Opening Science Symposium

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About Symposium

Join us in Farmington, Connecticut Oct. 8 at the inaugural scientific symposium celebrating the opening of The Jackson Laboratory for Genomic Medicine. The focus of JAX Genomic Medicine will be on advancing genomic sciences relevant to human health and disease. The event will showcase the new state of the art 183,500-square-foot research building.

Introducing The Jackson Laboratory

  • Symposium themes include clinical genomics, modeling human diseases, and genomic technologies.

Confirmed speakers include:

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Register for the symposium

Registration fee of $50 includes symposium materials and meals provided at the event.

Read more

http://www.jax.org/ct/symposium.html

Major revision of the NCBI genomes FTP site this summer

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Within the next two weeks, NCBI will make a major revision to the genomes FTP site. This redesign will expand available content and facilitate data access through an organized, predictable directory hierarchy. The updated site will also provide greater support for downloading assembled genome sequences and/or corresponding annotation data. To give those with automated tools time to update, we plan to maintain the older content and structure of the preexisting /genomes/ FTP site in parallel with the new structure for six months.
  • The new FTP site structure provides a single entry point to access content representing either GenBank or RefSeq data. Advantages of the updated genomes FTP site include the comprehensive provision of data through a single process flow that is reliant on content in NCBI’s Assembly database (which excludes viruses at this time), integration of quality assurance regression tests, and provision of a consistent core set of files for all organisms and assemblies.

Read more

Tuesday, 22 July 2014

Junior Research Fellow (Bioinformatics) @ INDIAN INSTITUTE OF SPICES RESEARCH

bioinformatics jobs in Kozhikode – 673 012, Kerala

Position details:

Walk- in- Test cum Interview (based on test) for the selection of One Junior Research Fellow under the scheme “Distributed Information Sub Centre –DISC” will be held at this Institute as per details indicated below.
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Upper age limit

  • 35 years for men & 40 years for women as on date of Interview(Upper age limits are relaxable for SC,ST and OBCcandidates as per Govt. of India norms (at present 5 years for SC/ST and 3 years for OBC)

Duration of Project

  • up to 31-03-2017 or the completion of the project whichever is earlier.

General Terms and conditions

  1. The above positions are purely on temporary basis and is co-terminus with the closure of the project. There is no provision of re-employment after termination of project.
  2. The selected candidate will not have any right for claiming pay scale or absorption against any regular post being vacant on a later date at this Institute.
  3. No TA/DA will be paid for attending the Interview.
  4. Canvassing in any form will lead to cancellation of candidate.
  5. The decision of Director, IISR would be final and binding in all aspects.
  6. Candidates will not be permitted to enter the Examination Hall after 10.00 A.M.
  7. Candidates who secure the minimum marks prescribed by the Institute in written test only will be eligible for attending the interview.
  8. The number of candidates to be called for the interview will be decided by the Director of the Institute.
  9. Those who do not possess original Degree/PG certificate or Provisional certificate will not be allowed to attend the Test/Interview.

Note

  • All relevant certificates (in original) and bio data,
  • No objection certificate in case he/she is employed elsewhere and experience certificate in original (if any) need to be produced at the time of interview.

Read more

Click here for more information